rs50621269 SNP Detail

Summary

• ID
  rs50621269
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172460554 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTCC GTCCCCGCTC AGCACTTGCC
  Y
  TAGCGGGCCA CGTAGTCTCT TGGAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120013326	PARCsnp_1.20741	PARC_SEQ	INBRED	f	SNP			C	T
ss120015552	PARCsnp_1.10921	PARC_SEQ	INBRED	f	SNP			C	T
ss146197865	ENSMUSSNP7008943	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss320126698	CHEV_1_174563118	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs50621269					SNP	T	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172460554 () rs orientation: forward

Symbol	Name	Function Class
Dusp23	dual specificity phosphatase 23	50 bp upstream
Gm35601	predicted gene, 35601	42 bp upstream
Rr396594	regulatory region 396594	within coordinates
Rr423641	regulatory region 423641	349 bp distal
Rr423642	regulatory region 423642	208 bp distal
Rr423643	regulatory region 423643	within coordinates
Rr423644	regulatory region 423644	70 bp proximal
Rr423645	regulatory region 423645	818 bp proximal
Tssr10245	transcription start site region 10245	77 bp upstream
Tssr15247	transcription start site region 15247	178 bp upstream
Tssr15248	transcription start site region 15248	118 bp upstream
Tssr15249	transcription start site region 15249	44 bp upstream