rs50618618 SNP Detail

Summary

• ID
  rs50618618
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:117148640 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGCA TAACTAGGGG CAGCTGTTAC
  Y
  ACCACCACCA CGGGGACACT GATAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60932520	NES16191105	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	T	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50618618					SNP	C	C	C	C	C	C	T	C	T	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60932520	NES16191105	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117148640 () rs orientation: forward

Symbol	Name	Function Class
Cxcl12	C-X-C motif chemokine ligand 12	Intron
Rr637287	regulatory region 637287	1056 bp distal
Rr637288	regulatory region 637288	752 bp proximal
Tssr58391	transcription start site region 58391	1674 bp downstream
Tssr58392	transcription start site region 58392	192 bp downstream
Tssr58393	transcription start site region 58393	173 bp downstream
Tssr58394	transcription start site region 58394	133 bp downstream
Tssr58395	transcription start site region 58395	1813 bp upstream
Tssr58396	transcription start site region 58396	1829 bp upstream
Tssr58397	transcription start site region 58397	1867 bp upstream
Tssr58398	transcription start site region 58398	1893 bp upstream
Tssr58399	transcription start site region 58399	1915 bp upstream
Tssr58400	transcription start site region 58400	1943 bp upstream
Tssr58401	transcription start site region 58401	1979 bp upstream
Tssr62617	transcription start site region 62617	1877 bp downstream
Tssr62618	transcription start site region 62618	1899 bp downstream
Tssr62619	transcription start site region 62619	1935 bp downstream
Tssr62620	transcription start site region 62620	1978 bp downstream