rs50618337 SNP Detail

Summary

• ID
  rs50618337
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:52201073 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCGCTAATG CCCTCCCTTG TGTGTGTGTG TGCCTTCTAT
  AAAATGGAAA GCTTACAATA CCTCCTCCAT CAAAGCCGCA GGCCTAAGAG CCAGCCTGAG
  Y
  ACGGACTGCC AGTGGGGAGA TGAGGCCTGG GATTTAGAGC CCCTTTGTGC GGGTGGAGGC
  TGGGTTTGGG GGAGAGGAGA CAGAGGGAGA CGGACAGTCC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60886892	NES15970369	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50618337					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60886892	NES15970369	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:52201073 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17429	CpG island 17429			1976 bp distal
Cpgi17430	CpG island 17430			232 bp proximal
Cpgi17431	CpG island 17431			1037 bp proximal
Gm57855	predicted gene, 57855			mRNA-UTR
				Noncoding-Transcript-Variant
Hoxa9	homeobox A9			mRNA-UTR
				Noncoding-Transcript-Variant
Rr630376	regulatory region 630376			1904 bp distal
Tssr61006	transcription start site region 61006			500 bp downstream
Tssr61007	transcription start site region 61007			1123 bp downstream
Tssr61008	transcription start site region 61008			1144 bp downstream
Tssr61009	transcription start site region 61009			1729 bp downstream
Tssr61010	transcription start site region 61010			1852 bp downstream