rs50618054 SNP Detail

Summary

• ID
  rs50618054
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:74856135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGACCTCTA TTTGTCTTGA
  ACTCTGGGGA CTCTGGGAAA TTCAATGCTA TCTTCATAGT GTTCAAGCTT AATTAGGAGA
  ACAGAGGTGG ATAAATGGCA TGACACATGC GGCAAACACA GTGGTGATGA TAAAAGGACA
  GGGAGCAAGA GAACCACATA GTCAGGCCCA GGAAATTTAA TGGACCACCT AGTTCCTAGG
  W
  AGGGTCACAA AAGAGGTTCA ATCTTTAGCA CCACTTATAT ATACAGGGCA TTGGTGGTAC
  ATGCCTTAAT CTTAGCACTC AGGAAGTAGA AATAGAAGAA TTAGAAATTA AAGATCATCC
  TCACCTTTAT AGGGAGTTCA AGGCCAGCCT GGGCTACATG AGGCCCTGTC TTTAAAAAAA
  ATTAACAAAA ACCCAAAGAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61183417	NES16691617	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	A	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50618054					SNP	T	T	T	T	T	T	A	T	T	A	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61183417	NES16691617	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:74856135 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lnx1	ligand of numb-protein X 1			Intron
				Noncoding-Transcript-Variant
Rr613330	regulatory region 613330			491 bp distal