rs50610604 SNP Detail

Summary

• ID
  rs50610604
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135835639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTGTATA TCTCTGGCTG
  TCCTAGAACT CACTTTGTAG ACCAGGCTGG CCTTGAACTC AGAAATCTGC CTGCCTCTGC
  CTCCCGAGTG CTAGGCTTAA AGGCGTGTGC CACCACGCCT GGCCTTACTT GGTTTGGTTT
  TTTTTTTTTT AAGTTTTTTC AATAATTATA TTTTAAGTCC TCTGCGTCTG TGTGCATGAG
  Y
  GTGCTCACGC ACACGCATGT GAGAACGTGT GCTCACATAC ATATGCCACA TGTGTAAGGA
  TCCCTATGGA GGCCAGAGGT ATCAGACCCC ATGGAGTTGC TGGTAGTTCT GAGCCCTCTG
  ACTTGAGTGC TGGGGGTCAA ACTTGTATCT TCTACAAGAG CAGCTCTTTC TCTTAACTGC
  AGGGCCTTGC TCTCTTGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147558548	ENSMUSSNP2521131	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50610604					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135835639 () rs orientation: forward

Symbol	Name	Function Class
Rr602271	regulatory region 602271	794 bp distal
Rr602272	regulatory region 602272	994 bp distal
Rr602273	regulatory region 602273	1591 bp proximal