rs50605532 SNP Detail

Summary

• ID
  rs50605532
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129821184 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGAG AAGATTAAGG CTCCCATTGG
  Y
  TACTTACTGA TTTCTAGGCC AGTCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147454551	ENSMUSSNP6390839	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss321316115	CHEV_4_129604635	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50605532					SNP	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129821184 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14911	CpG island 14911	1116 bp proximal
Rr600385	regulatory region 600385	within coordinates
Rr600386	regulatory region 600386	574 bp distal
Rr600387	regulatory region 600387	848 bp proximal
Rr600388	regulatory region 600388	1227 bp proximal
Spocd1	SPOC domain containing 1	1858 bp upstream
Tssr39208	transcription start site region 39208	1376 bp upstream
Tssr39209	transcription start site region 39209	1398 bp upstream