rs50602981 SNP Detail

Summary

• ID
  rs50602981
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:145657148 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGACTGTTT GGCTAAATAG
  AAAATCCAAC CTACCTGAGA CCCTCAGCCT CAGCCTCAGC ACCCCCTTCA GCCCTGAACC
  CCCTCGGCTT GTTTAACTCT TCCAGGCCGG GAACATGGCT CCCTTTTCAG CACCCTTTAA
  CCACACAATC ATGAAGTGCT CATTCACTGA CAAGCCCTCT GGGTTTCTCT TCTCCTCAGT
  W
  CACTTAAGAT AAAAGAAGTT GCAGAGAGAG AGGAGACAGC AGTCTGTCCT CTGACTGTAC
  GTTAAATGTC CCCAAGGGCT CACATGTTGA AAGGCTCAGT CACCAGCCTG TGTCATTACC
  AGGAAGTGGT GGTGCCTTTA GAAGGCAGGA CCTTGTGGAA GGAAATGATG TCACAGGCAT
  TCGTCCTGAA GGGACCCCCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss136040897	ENSMUSSNP4959778	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
ss321009199	CHEV_3_145614357	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs50602981					SNP	A	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145657148 () rs orientation: forward

Symbol	Name	Function Class
Rr586881	regulatory region 586881	439 bp distal
Rr586882	regulatory region 586882	within coordinates
Rr586883	regulatory region 586883	1269 bp proximal