rs50600217 SNP Detail

Summary

• ID
  rs50600217
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:116837422 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATGTCATG ACACACAGAT
  AACATGTATC GCACGGAACT CTTACCGATA CCATCGTAAA TATAATCTTT GTCAAAACAT
  AATTCTGATT CAGCTGTCCC TTGGAAACAT GAAAATTCAT TGTTATGCAT TTGACTGTCC
  TGTTTCCTGG ATTTTTGTCC AAAGCCAAGA ACTATAAATT CACCTTTTAA GTCAATCTCT
  Y
  TCATGAACTT ACTCTCTTAA TCTCTCCATT TCAGTCATGT CTCTTTCTTG AAACTTCCAT
  CTCTTGCATT ACTGAGATAT TTACCATGAT ATCTAATTTC TAACTTGTTG TTTTTTCCTC
  ACATGGCTCT GGTAGTTTTC TTGAATCCTT ACAATAACTC AGTACCTTGA AGAGAGATGT
  CATACTACCT CTGTAGCATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss60435219	NES15935653	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs50600217					SNP	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60435219	NES15935653	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116837422 () rs orientation: forward

Symbol	Name	Function Class
Rr583826	regulatory region 583826	525 bp proximal