rs50594442 SNP Detail

Summary

• ID
  rs50594442
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:105804577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGAGGTCC TCAGTTCTAT
  TCCCAGCAAC CACATGGTGG CTCACAACCA TCTATAATGG GATCCAGTGC CCTCTTCTGG
  TGTGTCTGAA GACAAAAACA CAGTGTACTT ACATATAATA ATAAATAAAT CTTTAAAACA
  AACAAACAAA CAAGAGCAAT GGCAACTTGT GATGGTTTGA ATAAAAATGG CTCCCTTAGG
  Y
  TCATAGGGGA GTTGCAGTAT TAGGAGGTGT GGCCTTGTTG GAGGAACTGT CACTGTCTCA
  GAAGCTCAAG CCAGGTTTAG TGGCTTATGG TCTCTTCCTG CTGCCTGCTG ATCTAGATGT
  AGAATTCTCA GTTACTGTTC CAGCACTATG TCTGTCTACG TGCCACCATG CTTCCTACCA
  TGATGATAAT GGATAAAACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss135578413	ENSMUSSNP2375862	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320863586	CHEV_3_105700179	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs50594442					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105804577 () rs orientation: forward

Symbol	Name	Function Class
Rr375530	regulatory region 375530	1669 bp downstream
Rr582805	regulatory region 582805	1723 bp distal
Rr582806	regulatory region 582806	1623 bp proximal
Tmigd3	transmembrane and immunoglobulin domain containing 3	Intron