rs50590704 SNP Detail

Summary

• ID
  rs50590704
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102276687 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTAGCTCG AAAGGAGAAA
  GGACTCTGAT ACCAGATCTC TCTCTCTCTC TCTGCTTCCT GACTGCCTAT GCATTGTGAC
  CAGCTGTCTT ACACTCCTGC TGCTGTTCTT CCACAGCACA CTGCCATCTA AGACTCTGGG
  TCAAAATCAA CCCTCCCTCT CTTAAGTTGC CTTTGGTAAC GGAGTTTTTA TTTTACCGTA
  Y
  GGGAGTAATT CTGGTGCTTC CAGAGCCACT GGGGGCTTTC CTTCCTCATT CTCCTCCATT
  CTGTTTGTCT TCTTCTCACT ATTTGGGATC AGTTGTTGTG TGGGGTGAAG CAGTACATGG
  AGGGGCAAAG TAGCACCCAA GGTCAGATGA TCCATGACTC ATAAATAGCT TCTAATATCT
  GAGGAGCCTG CAAAATTCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320437715	CHEV_2_102286499	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs50590704					SNP	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss147112188	ENSMUSSNP5987844	ENSEMBL	ENSEMBL_Sanger	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102276687 () rs orientation: forward

Symbol	Name	Function Class
Rr561693	regulatory region 561693	1482 bp proximal