rs50586031 SNP Detail

Summary

• ID
  rs50586031
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121162551 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCAGGCAG AGAAAGAACA
  CTTGGTCTCT TAAAACCTCA AAGCCACCCC CAGTGACTCA CCTTCCACAA CAAAGCCACA
  CCTCCTAATC CTTTCCAAAC CGTTCCACCA ATGGGGACCA AGTATGCAAA TATCTGAGAG
  CCTATTGGGG CATTGTCACT CACACCACCA CAGGAGCTCA TTGGCATAAT GCTTTTTTTT
  T
  GGGGGGGGCG GGGCGGTTCA AGACAGGGTT TCTGTGTAGC CCTGGCTGTC CTGGAACTCA
  CTCTGTAGAC CAGGCTGGCC TCGAACTTAG AAATCTGCCT GCCTCCTTCC CCCCCCCCCG
  CGCCCCCCCC CCCGAGTGCT GGGATTAAAG GTGTGCGCCA CTACCACCTG GTTGGCATAA
  TACTTTGATT AGTTGTCTGC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss135719316	ENSMUSSNP3231340	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J
rs50586031					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121162551 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13757	CpG island 13757	1559 bp proximal
Gm33363	predicted gene, 33363	135 bp upstream
Rr397973	regulatory region 397973	567 bp upstream
Rr397974	regulatory region 397974	1287 bp upstream
Rr584057	regulatory region 584057	259 bp proximal
Rr584058	regulatory region 584058	718 bp proximal
Rr584059	regulatory region 584059	1306 bp proximal
Tssr31438	transcription start site region 31438	680 bp upstream
Tssr31439	transcription start site region 31439	745 bp upstream