rs50585156 SNP Detail

Summary

• ID
  rs50585156
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:88039019 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTTGATTT CAACCATGAC
  TCTGACACTT GAAACGTCAA TCACTTGAAA CTTCCTGGGT TATATGAGCA TTTTTTTTTA
  ATTTAAAAAG AGGGTTTCTC TGTGGAGCCC TGGCTGTCCT GGACCTCGCT CTGTAGACCA
  GACTGACCTC GAATTCACAG AGCTCTGCCT GCCTCTGCCT CCCAAGAGCT GGGATTAAAG
  S
  CGTGCACCAC CACGCCTGGC CTGATATGAG CATCTTATGA TCTAATAAAC AACTATTGCA
  GAAAATGAAG ATGGTGATGA TCACCAGCTG TTTCAAAAAC CCAAAGGATG GGGTTAGGCA
  GCTCCTGGGG CTGACTGTGC AGAAGCCCCC GGGGCGAGGG TTGCACACCT GCTAGGATGT
  ATGAGCCTAG AGTGAAGAAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss133364813	ENSMUSSNP6744717	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs50585156					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:88039019 () rs orientation: forward

Symbol	Name	Function Class
Rr633809	regulatory region 633809	399 bp distal
Rr633810	regulatory region 633810	417 bp proximal
Tssr1927	transcription start site region 1927	1164 bp downstream
Tssr57564	transcription start site region 57564	1148 bp downstream
Tssr57565	transcription start site region 57565	1107 bp downstream