rs50584267 SNP Detail

Summary

• ID
  rs50584267
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:33108699 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTGC CAGAGCCTTC CAAAGACAGA
  K
  CCAGATGCTC ACAACCAACC ATTGC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145478443	ENSMUSSNP6249192	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50584267					SNP	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:33108699 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr370221	regulatory region 370221			1591 bp upstream
Rr525823	regulatory region 525823			1194 bp proximal
Rr525824	regulatory region 525824			1562 bp proximal
Rr525825	regulatory region 525825			1747 bp proximal
Rr525826	regulatory region 525826			1798 bp proximal
Tssr147415	transcription start site region 147415			1824 bp downstream
Tssr147416	transcription start site region 147416			1845 bp downstream
Zfp870	zinc finger protein 870			Intron
				Noncoding-Transcript-Variant