rs50584022 SNP Detail

Summary

• ID
  rs50584022
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:19527304 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAATGTTCT GTAGTAGAGC
  CAAACTTACC TCCTCCCCCC CTCAAGAGAA AAGGGGGTCA TTATGAATAT GTGTTTATTA
  AATCAGTGAG TCCTGGATCT TGGATTACTT CTGTAATGCA ACTACACGAT GTGACATGCC
  TCACTTGTAT TTCTGTATTG GTATCAAAAT TGTTGGAAAT ATTGAAGATT CTAAAAGAAG
  K
  AAGCTGTACG AAATAGCACT CCTTAGCTAA TAATTCAAAG CTGCCTGTAT ACTCATGAAG
  AGACAGCTAT AGAAATAAGC ACAGGTTAGC ATGCTCTGGT GCATAGTGCA GAATTAAAAT
  TCAATTCTCT GGAAACTGTC AGAGAATCTT CAAGTTAAAA GTAAATTTTC CAAGCAAGGA
  ATAGCTTATG AGGTCATCAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52626610	NES15515233	PERLEGEN	MM_PANEL2	f	SNP	T	G	G	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50584022					SNP	T	G	G	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52626610	NES15515233	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:19527304 () rs orientation: forward

Symbol	Name	Function Class
Tcrg	T cell receptor gamma chain	within coordinates
Trgc4	T cell receptor gamma, constant 4	1424 bp upstream
Trgj4	T cell receptor gamma joining 4	922 bp downstream
Tssr118539	transcription start site region 118539	1436 bp downstream
Tssr118540	transcription start site region 118540	1363 bp downstream
Tssr118541	transcription start site region 118541	1307 bp downstream
Tssr118542	transcription start site region 118542	1229 bp downstream
Tssr118543	transcription start site region 118543	1193 bp downstream
Tssr118544	transcription start site region 118544	1173 bp downstream
Tssr118545	transcription start site region 118545	1147 bp downstream
Tssr118546	transcription start site region 118546	1065 bp downstream
Tssr118547	transcription start site region 118547	992 bp downstream
Tssr118548	transcription start site region 118548	973 bp downstream
Tssr118549	transcription start site region 118549	395 bp downstream
Tssr118550	transcription start site region 118550	308 bp upstream
Tssr118551	transcription start site region 118551	1066 bp upstream
Tssr121588	transcription start site region 121588	1425 bp upstream
Tssr121589	transcription start site region 121589	124 bp downstream
Tssr121590	transcription start site region 121590	1190 bp downstream