rs50583657 SNP Detail

Summary

• ID
  rs50583657
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:116688087 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCAGCGTT CAAAAATCCA
  TGTGTATATT TGCTGTTCCG AATGGCAGTT TTCTTGATGC TAGAGAACAA TGTGTGTGAT
  TCCACAGCAT AGATGCCACG CTTCTTCATG CGACCTCCAC CTTGCCGGTC ACAAGGATGC
  CTACGCTCCC CGAAGCCTTG GGTGCTGCTG TGCCGATGCA CACCTGTTTT GTTCAGACAA
  S
  GGAAAGAACT GCCAGCAAAG GAGATGTGAA TGTCTCACCC CAGAGAGAAT GACCTTCATC
  AAGGAAGCAG GTAACGCTGC TGAGGATGTG GGGAGAGAGA AATGCTTACG CCCTGCCAGA
  GGGAGGCTCA GCAGTAGAGC CACTGTGGAG GTTTGTGTGG AGGTTCGCTG AAACCCCAAG
  ACAACACCAC GACCTATTCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss133578839	ENSMUSSNP4898280	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs50583657					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116688087 () rs orientation: forward

Symbol	Name	Function Class
Rr637245	regulatory region 637245	1159 bp proximal
Rr637246	regulatory region 637246	1436 bp proximal
Tmem72	transmembrane protein 72	Intron