rs50582104 SNP Detail

Summary

• ID
  rs50582104
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52815178 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACAACCTA ACCCCACACA
  CAGCCTGCAA AGCACAAAGG CCATTTTATA AGAGCTGATT TAGGCCATGG TTAGACGGGT
  TAGAACTATT CCAAGAGCAG TGGTGGAGCT TGGGGCCACT TGGAGCTGGT GCTTAATAGC
  CCTCTTCCTT CACTGCTTGG ATACTTACAT AAAAACTGCT ATTCTGTGTT GTGACTGCAG
  K
  TATGGTTGTT GGAGGTACCC TTGGAAATGG CATACCTCTC TCTCTTTATT TCCTTATAGA
  AAGCACAAAA GGTCTTTTAA AGTCTGAGTT TTGAAGTTGC TGCCTTTGGG AGAGTTGGCA
  GTTACTGTGT ACTTTAAGCC TCTGAGTGAA TGGCACCAAG CTTTGGGAGA AGACAGCAAT
  GCACATGGAA CAGAGAGTGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135179448	ENSMUSSNP4166628	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	G
ss320765875	CHEV_3_52711679	CHEVERUD	SCREENING_POP	f	SNP				T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50582104					SNP	T	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52815178 () rs orientation: forward

Symbol	Name	Function Class
Gm20750	predicted gene, 20750	within coordinates
Rr576600	regulatory region 576600	321 bp distal
Rr576601	regulatory region 576601	382 bp distal