rs50580702 SNP Detail

Summary

• ID
  rs50580702
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:173958008 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGATGGGCAC CTCACTTCTT
  CCTTTTCCCT ACACAGGAAT CTATGGGGTT GGCAAAGCTG CCCTCCATCC ACCCGCTCTG
  GCCATCCTTA GCCACACCCC TGATGGGGCC ACACAGACCA TTGCCTGGGT GGGCAAGGGC
  ATCGTCTATG ACACCGGCGG TCTCAGCATC AAAGGAAAGG TAAGATGTGG GTTTCAGGGT
  R
  CAATTCAGAC TGGCACGTTC AAGTACCTAG TGCATTTAGT ATCAGGAGTG GGCGATTGTT
  TTATTTAAAA TCCTTCCTCT TCTACCCAAC ACAATTATTT TCAGGACTAC TCAGGAAATG
  GAACTAATAA TACAAGTTTA AAAATAACCC CAATAGCAAA TAATTCTCTT TTATTGAATT
  CCACACATAT TATCTTGCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss148339638	ENSMUSSNP5319229	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs50580702					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173958008 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Npepl1	aminopeptidase-like 1			Intron
				Noncoding-Transcript-Variant
Rr572073	regulatory region 572073			665 bp proximal
Rr572074	regulatory region 572074			930 bp proximal
Rr572075	regulatory region 572075			1979 bp proximal
Tssr788	transcription start site region 788			235 bp downstream