rs50579509 SNP Detail

Summary

• ID
  rs50579509
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:67475058 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAAAGGCC TAAAGCAGGA
  ACCAATTACG ATGTTTAGCT TTGAAGCTTG GGGGAGGAAT GGTGGAGGTG AGAACCGAAC
  CGGACCGAAC CGAAGGCTTC TCAGGTCAAG CAGATCACCA GCCTTTCTGA CATGCTCGAC
  AAACCAGGTC ACTTAATGTG TACATATGCT GAAATACGTA CAGATCAGAG GGTGATAACC
  R
  TGCGTGTGGG GTTAGGAGGG GGAGGAGTTG AACCATACGT AACTCTGCAC TGTTGCAATT
  CTTATATTCT GACAAAACCA TGCTAAGGGA GGAGACATTT ATTTTGGCTC ACAGTTTGAA
  GGGATGCAGT CTGTCATGGC AAGGAAGGCA TGGTGTCTGC AGTGGTTAGC CAGACACTGG
  CAGCTTCTCA TGATAAGAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss135258634	ENSMUSSNP1824003	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs50579509					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:67475058 () rs orientation: forward

Symbol	Name	Function Class
Rr577945	regulatory region 577945	1396 bp distal
Rr577947	regulatory region 577947	380 bp proximal
Rr577948	regulatory region 577948	748 bp proximal