rs50577735 SNP Detail

Summary

• ID
  rs50577735
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141171623 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAGCTGTG GTGGGCTTCT
  TGCAAAAACA TCATGGTAGG AAAACAAGTC TCTTGTCAGG GTGGAAAAGT ACCAACTTGT
  AAGTAAATAG CCCGAGATGG CTGCAGAGAT GACAGCCGCT TTCTGCTAGG AGTCGGCTCC
  CAACAGGCCA CTGAGTAATT TATTTACCCA GTCCGAGTTG CTGGGTTTGA TCCCTAATAC
  W
  ACAAACAAAC AAATAAATAA AATTACCAAA ACCATAAAGG GAGTCACAAG TAGGTCCACA
  TCTTTCCTTT GTCACAAAGA TGTTTGAGTA ATCCTTTTGC ACCTAAGTTT TCACTCCTCC
  CAAAGAGAGG AGAAAGAACT CGGTTGTATC GTGTGAGCAA TGAGACAATA AACAGTAAAG
  AGCTTAACAC AGAGTCCGGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147737261	ENSMUSSNP3252794	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs50577735					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141171623 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15230	CpG island 15230			169 bp proximal
Gm42337	predicted gene, 42337			Intron
				Splice-Site
Rr603768	regulatory region 603768			within coordinates
Rr603769	regulatory region 603769			353 bp proximal
Rr603770	regulatory region 603770			793 bp proximal
Tssr40079	transcription start site region 40079			345 bp upstream
Tssr44320	transcription start site region 44320			1117 bp downstream
Zbtb17	zinc finger and BTB domain containing 17			361 bp upstream