rs50577161 SNP Detail

Summary

• ID
  rs50577161
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148174168 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCCATTTG AAGGCACAAC
  CCTCAGTCCC CAAGGAAGGC GAACTACAAG TCTGCCATTG TAATGGACAG CTATTCTGAT
  TTTGTTTCTA GGCAGAGTAT TTCTGTGATG TCCAGGCTGG CCTTGAACTT GAGAGTTTCC
  TGTTCTATCC TCCCAAGGGC TGGGATAGCA GGCATGTGCC TTTACCTGGG TCTAATTATG
  S
  TTTATTGCAT AAGTTTATTT AACTGTTATA AAAATTATAT ACAGTAGCAA GTTGTTTCCA
  TACCTGTATG GCAATATATC CTGTGATGTT TATTTCTTAA TCATGTTTCT TTAGTTTGTA
  TGTTGATATG TAGGCATACA TTCCATGCCC CTATGTGGAA GAGGACCAAC TTCCTTGAGT
  TGATCTTCAC TTTTCTACCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147992089	ENSMUSSNP3347597	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50577161					SNP	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148174168 () rs orientation: forward

Symbol	Name	Function Class
Agtrap	angiotensin II, type I receptor-associated protein	1680 bp upstream
Cpgi15288	CpG island 15288	1160 bp distal
Rr377390	regulatory region 377390	within coordinates
Rr604583	regulatory region 604583	1691 bp distal
Rr604584	regulatory region 604584	1190 bp distal
Tssr44579	transcription start site region 44579	1684 bp upstream
Tssr44580	transcription start site region 44580	1655 bp upstream
Tssr44581	transcription start site region 44581	1642 bp upstream
Tssr44582	transcription start site region 44582	521 bp upstream
Tssr44583	transcription start site region 44583	493 bp upstream