rs50576679 SNP Detail

Summary

• ID
  rs50576679
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:58789595 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCTATAGT AACTGATGGT
  AATAAGACAA CTAATCACGA AATGATCAAT ACTTTGTTAA ATTATCTTTT CCGTTGCTCC
  TATACAGGAG CTTTCCTCTG AATCCCAGTA TTTGCTTGGT AACATTCAAA AGAAGCAATG
  AGGAAGGGGG CTGCTCTGGG AATGATTGCT TTCAAATGTC TATTTGGGCT GTAGAAATGG
  Y
  GGTAAAGAAA CACCTCTCTG CAGTCTCTGG TGGCCACTGT CATTGCTCAA AGGAAGCTTC
  AATTGAGAAG ACAGCCTTAA GCCGCTTACT GTTTTATATT AATGGGGCAG CCACTTTACC
  ACTAAGAGAA CTTATCTGAG GTTCTCTTCT TTTAAGCAAG TTGATGTAAC ATCATTGGCT
  GGGTAGGGAT GGCATCTTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135210131	ENSMUSSNP4029481	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50576679					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58789595 () rs orientation: forward

Symbol	Name	Function Class
Clrn1	clarin 1	Intron
Rr375038	regulatory region 375038	212 bp upstream
Rr577289	regulatory region 577289	695 bp proximal
Rr577290	regulatory region 577290	1282 bp proximal