rs50571617 SNP Detail

Summary

• ID
  rs50571617
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174336778 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAATTACA AGTTATGATG
  ATGTCTTAAA ATAGTCTTCT TCTGTGCATG TGCATGGTGG CTCATGTCTT TAATCCCAGC
  ACTCTGGAAG CGGAGGCAGG TGGATCTCTA TGAGTTCAAG TCCAGCCTGA TCTACAGAGA
  GGGTTCCAGG ACAGCCAGGG TTGTTACACA GAGAAACCCT GTCTCAAAAG ACAAAAACAA
  G
  CAAACAAACC AGACCAAACC AAATCATACC AGAAGTCTTC TAAAACCCAA CTGGGACAAC
  GGGGAAACCA AGAACCATTT AGAAAATAAT AACAGAAATT CACATCAAAG TGTATCAAAG
  CCAAGCTTTC CAGACAAAGC CAATGAAAGC AGGTAATGTT TCTGTCTTTA AAATGAAAAA
  GAGAAGGTTC ATTTGTCGCT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148344163	ENSMUSSNP34978	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50571617					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174336778 () rs orientation: forward

Symbol	Name	Function Class
Rr374314	regulatory region 374314	within coordinates
Rr572141	regulatory region 572141	1813 bp distal
Rr572142	regulatory region 572142	1905 bp distal