rs50566250 SNP Detail

Summary

• ID
  rs50566250
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:13152169 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCTCAAAT AGATAAGCTA
  AAGTGGATAG AAGGAGCACA TAGGCAAGTA CTCTGCCTTA AAGAGATTCT TTTTAGGATG
  TCATTTATAT GGCTTGGTTA TATTCTTATT TCTCAATGGC ATCATAAAAT ATAGTCTCAA
  CTACCTGGAA CACTGTCTCT TTTAATTGAT CAACATTTCC CAATTCACAG AATAATGGAG
  R
  AAATTCTGTC TAACCATATA CTACTCAAGG CAATGTAAAC TTCTGATGAA TTCAGTACAT
  CACTACATCT TTACGTGGAT GTAATATCCC TTACTAGCAC AATGGGAACT GTGAACTGCC
  AAGGCAAGTG CCTACAATTA CCAGGCAATC ATCCAATGTA ATGGAGATGT CTAGGCTCAT
  AAATGATTTT CTTATTGAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	MSM/Ms	SM/J
ss133003228	ENSMUSSNP6344295	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		G
ss321747181	CHEV_6_13102170	CHEVERUD	SCREENING_POP	f	SNP		A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	MSM/Ms	SM/J
rs50566250					SNP	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:13152169 () rs orientation: forward

Symbol	Name	Function Class
Rr626556	regulatory region 626556	30 bp proximal
Rr626557	regulatory region 626557	275 bp proximal