rs50559801 SNP Detail

Summary

• ID
  rs50559801
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:137045413 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTTTTCTGA CATGAATTCA GTCTGCAGCA ACAAAAGGGA
  AGGGTGGCCT CAGAACCAGA AGTGAGCAGG AGCTTGTCTT AAATCTGTGT TTACTTCTGT
  Y
  AGAAATGTCT TACTCTGTAG ACCAGGCTGG CCTCGAACTC AGAAATCCAC CTGCCTCTGC
  CTCCCAAGTG CTGGGATTAA AGCATGAGCC ATCACTGGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss135939694	ENSMUSSNP6771262	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		T
ss320975387	CHEV_3_137002616	CHEVERUD	SCREENING_POP	f	SNP			T		C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs50559801					SNP	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137045413 () rs orientation: forward

Symbol	Name	Function Class
Emcn	endomucin	1411 bp upstream
Rr585936	regulatory region 585936	1135 bp proximal
Tssr31897	transcription start site region 31897	1380 bp upstream
Tssr31898	transcription start site region 31898	1424 bp upstream
Tssr31899	transcription start site region 31899	1451 bp upstream
Tssr31900	transcription start site region 31900	1495 bp upstream
Tssr31901	transcription start site region 31901	1527 bp upstream
Tssr31902	transcription start site region 31902	1560 bp upstream