rs50559483 SNP Detail

Summary

• ID
  rs50559483
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148986995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTCT GGCTCCAGCT AGTGAGTGTT
  T
  CCTGGCCTGG GCAGAGTTTA GCCTG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148022637	ENSMUSSNP5988539	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss321423646	CHEV_4_148276647	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50559483					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148986995 () rs orientation: forward

Symbol	Name	Function Class
Casz1	castor zinc finger 1	Intron
Cpgi15314	CpG island 15314	613 bp distal
Rr604790	regulatory region 604790	1779 bp distal
Rr604791	regulatory region 604791	537 bp proximal
Tssr40309	transcription start site region 40309	1336 bp downstream
Tssr40310	transcription start site region 40310	1227 bp downstream