rs50559399 SNP Detail

Summary

• ID
  rs50559399
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:63807871 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTGGGAGG AACTGAGGAC
  AAGACCCTCC GTGTACCATT CAAAGTAAAA CTTCCCTCCA GTAAGAAAGT CAGGAGCTCT
  GGCATGGCAA CATGGAATTA GCAGGGGTTG TCTGGGCCTG GTGACAACAT AAACAAAAGT
  CTTTTTTTCT TCCATGAGTG AATTTGTTCA GGAAGTAATA AAGGAGAGTC TGAGGCTGGA
  K
  AGATCACTAG TCCTCTTTGA CTGACAGTGG GGGAGTGGGA GGAGGGATGC TCAGTGACCT
  CTCAGCACAA GATATAGTAT TTCACCTTTT CATCCGTCTT AGCCTAGCCG ATACCATAGA
  AACAACCCAT TTGTATTATT CAGTTCAACA GAGGCAATTA CAATGTGACG GCAAAGCATC
  ATGGGCAAAA AGAAACTTTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60416427	NES15918986	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50559399					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60416427	NES15918986	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:63807871 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13219	CpG island 13219	1195 bp distal
Plch1	phospholipase C, eta 1	978 bp upstream
Rr577602	regulatory region 577602	1088 bp distal
Rr577603	regulatory region 577603	488 bp distal
Tssr33440	transcription start site region 33440	1043 bp upstream
Tssr33441	transcription start site region 33441	1018 bp upstream
Tssr33442	transcription start site region 33442	973 bp upstream