rs50558053 SNP Detail

Summary

• ID
  rs50558053
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:57042754 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATAAT TATCAAATAA TCATATATAA
  R
  AATATAGAAA TTATATTCAA AGATG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135198842	ENSMUSSNP4754928	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
ss320779458	CHEV_3_56939255	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50558053					SNP	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:57042754 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13195	CpG island 13195	1487 bp proximal
Gm8177	predicted gene 8177	161 bp downstream
Gm64707	predicted gene, 64707	1744 bp upstream
Rr375016	regulatory region 375016	1025 bp upstream
Rr577070	regulatory region 577070	1453 bp proximal
Rr577071	regulatory region 577071	1755 bp proximal