rs50555122 SNP Detail

Summary

• ID
  rs50555122
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:102997311 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGCCCTT ACCCTTGACC
  TACACAGGCC TCATAGATTT TTAAATGCCA TCTCTAGTGC TCCCTCATCA CCATGTCCAG
  CTCTGATGGA AAGCTGGGTA CTTTTTCAGT GGGATTAACT GGAAGAAAGC AGTATCTGTT
  CCTGCAACCA CTCCCTCTTA TGGGTGAGAA GAGTCCTGGA GGCTTTGAAA TACCATTTTC
  Y
  TTACATGTCG AGAAAGATGC TTAGGATCCT GTGTGTTCAC TTTCCACAGT AAGACTTATG
  CTCACCGCCG CCTGAAGTTC CTCTCCTCCA AGTTCCAGGT CCATCAGATG CTCAACGAGA
  TGGATGAGCT GAAGGAGCTG AAGAACAACC CCCACCGGGA CTTTTATAAC TGCAGGAAGG
  TAAGTGTGTC AGCTCAGAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60430060	NES15929610	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs50555122					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60430060	NES15929610	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102997311 () rs orientation: forward

Symbol	Name	Function Class
Ampd1	adenosine monophosphate deaminase 1	Intron
Rr582303	regulatory region 582303	1822 bp proximal
Tssr30964	transcription start site region 30964	188 bp upstream
Tssr30965	transcription start site region 30965	235 bp upstream