rs50554756 SNP Detail

Summary

• ID
  rs50554756
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130549248 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTTTTGA CAGCCAGGTG
  AGCAGAGAAC AGTGCTTTCC CAGGGCAAAG ATTTGGAGAG TTTGATGGAA AAATAACCCC
  CACAACTTGA GGGTGTGCGT GGTCTAGACC ACTTTGAGTC ATATCACACA ATTAGTGACT
  ACCTAGCACT TCTTATTTAG ATCAGTAAAG CAAGCTATAT GTTACCAAAT AGACTTTGTA
  Y
  TGATATTTAA CCTAAAGATC GGATACGGTG TAGTCCTGGC TGGCCTAGAA CTCACTGGGT
  AGACCAGGCT GGTCTCAGAC TTACAGAAAT CTTCCTGCTT CTGCCTCCCA AGTGCTGAAG
  TTACATACCA ATGTGCACAC TGTGAAGTAG GAATTTCTGG TTTCTTTGGA GACTCACTTG
  TGTCGTGTGG TGTTGTTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61080265	NES16598356	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs50554756					SNP	C	C	C	C	C	C	T	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61080265	NES16598356	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130549248 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13827	CpG island 13827	552 bp distal
Gm42997	predicted gene 42997	within coordinates
Gm43524	predicted gene 43524	1862 bp upstream
Rr585206	regulatory region 585206	1809 bp proximal