rs50553902 SNP Detail

Summary

• ID
  rs50553902
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:44074550 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTCATGAA TGCTCTGATA
  ACACGTCAAT TTCCAACACA TTTCACATCA TACTTTTTTT TTCTAAATAC CATCTGAGCT
  GTTGGGTAGA GAATGGATTT GAATGGATTT GTTGAGAGTC AAGAGTTGGT TCCAGTGAAA
  ATTCCACTGA AATAGATATG CAATTCATCT GGATGTAAAA CTCATGAGAC TTATTATTGA
  Y
  GGGTTATGAG TTAGAAATAA AGAATGGCTA TATTTATAGC TTCCTAGCAC TGATAACAAA
  GTGCTAGTAC TCTTTTATCT TCCATATCTT ACGCTTCCAG AGGTTGGGGT GAGCCCAGAA
  TTTGGGGGAA CCAACATACA GGCAGTAGCA GGGTATCTGC TCTTTGGAGG CTGAAGGAGA
  GAAGTCATTT CCTCACCCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146246427	ENSMUSSNP3678945	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321100057	CHEV_4_44087422	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50553902					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:44074550 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14207	CpG island 14207	1483 bp distal
Gne	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	Intron
Rr591149	regulatory region 591149	1783 bp distal
Rr591150	regulatory region 591150	1286 bp distal
Rr591151	regulatory region 591151	1553 bp distal
Rr591152	regulatory region 591152	364 bp distal
Tssr41482	transcription start site region 41482	1993 bp upstream
Tssr41483	transcription start site region 41483	1857 bp upstream
Tssr41484	transcription start site region 41484	1819 bp upstream
Tssr41485	transcription start site region 41485	1529 bp upstream