rs50553043 SNP Detail

Summary

• ID
  rs50553043
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:15748580 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAGGTGTT TTGTCTAGAT
  TAGGTACAGA GGATTGCAGG AAGGAAGAAA CAGGAAGTGG GTTTCGCTCT AGAGTCTCCC
  TCTCAGATCT TTCAATAGGG TCTCACTCTA GGCAAGACTG GCCAGGCTAG CTTCAAAATC
  ATGGCAACCC TCCTGCCTCA GCCTCTGGAG CTCAGATGTG AACCATTTGG TGTTATTCAC
  R
  AGGTTCATTA TTTGGTGAGG TGAAGGCAGG CAGATGAAAC AAGTGCTGGG AACAAGGCTA
  AGGATTTTGG TTCAAATAAA TGTTAATTGT TATGCAAGGA CAATGCCCCC CCCCCCCCGC
  ATTTAAGGTC CTGTCATCAG AGGGTTTAAA ATGACGAGCT GTGGGTATAG GGGAGAAAAG
  ACATGAAGAG GCTTACAACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60864987	NES15988415	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G		A	A	G	A
ss133006918	ENSMUSSNP4224096	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50553043					SNP	A	A	A	A	A	A	G	A	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60864987	NES15988415	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:15748580 () rs orientation: forward

Symbol	Name	Function Class
Mdfic	MyoD family inhibitor domain containing	Intron
Rr626684	regulatory region 626684	33 bp distal
Rr626685	regulatory region 626685	287 bp proximal
Tssr55009	transcription start site region 55009	967 bp upstream