rs50552873 SNP Detail

Summary

• ID
  rs50552873
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:71789117 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTTATAAAC CAGATATGGT GGAACACAAT CTGCAATGCT
  AGCATTCAGG GGGATTAGAA CCTCAAGGGA ACTTCAGCTA TATAGAGAAC AAGGCAGGCC
  Y
  GGAACATATG AGACTCCATC TCAAAAATAC AAAACCAAAG TAAAAATTCT AAGTATAAAT
  GAGTTAAAGA TTTTAAACGT GGGAGGTAAC AAGGATTAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss133277423	ENSMUSSNP801155	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss321818420	CHEV_6_71762127	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50552873					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:71789117 () rs orientation: forward

Symbol	Name	Function Class
Mrpl35	mitochondrial ribosomal protein L35	864 bp downstream
Reep1	receptor accessory protein 1	1423 bp downstream
Rr632010	regulatory region 632010	845 bp proximal