rs50551712 SNP Detail

Summary

• ID
  rs50551712
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127681784 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCATTCATG ATTTACTTAC
  CCTTTGATCT TTCCAGAAGG ATTTGAACTC GCTACAGGAG AAATAAGGAG TAAAATAGTA
  GTGTAAGATA GAGAAGCGAA TGAATGGTGA GAATCTGGAC TGGGGAGCTG TGCTAGCCCA
  GTTACTAAGA GGCAACCTCC TACTTGGCTC TACCCTCCCG ACGAGTCAGA GCAAAGCCCA
  K
  CTGAGTAGGA TCAGCCATCA CTCAGTGGAC CCCTGTGTGT GTGCTCACTC ATTCTAGCCA
  GCAGTCCCTC CCACACCCAC CACTAGCCAC CTTGTGTGCT TTAATGCACG GTCTCCCCTC
  GCCCCAGGCA TAGTACCAGA TTAATTAGAG GAGAAAGTTG AACATATTTT TGTTTATTTG
  TATGGCAGCC TTGATAATCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss135874262	ENSMUSSNP5267776	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320957917	CHEV_3_127591053	CHEVERUD	SCREENING_POP	f	SNP			T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs50551712					SNP	G	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127681784 () rs orientation: forward

Symbol	Name	Function Class
Fam241a	family with sequence similarity 241, member A	Intron
Rr584892	regulatory region 584892	1272 bp proximal
Rr584893	regulatory region 584893	1995 bp proximal