rs50551425 SNP Detail

Summary

• ID
  rs50551425
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:102181953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGGAACCAT ACCTGGGAAG
  AGGGCATCTC ACCTGAGGAA TTGTCTCCAT TAGTGGGCTT GTAGGAATGT CCGTGGGGTA
  TTTTCTTGAT TAATGATTGA TCCACACTAG AAGGCCCGGC CCACCATGGG TTGTGCAATT
  CTTAGGCAGG TAGCTTAGAA AGTAGATGAA CAATCCGATA AGCTTCTCAC CTCTGTGCTT
  Y
  CTGCTTCAGT TTCTGCCTCT AGGTCCAGGT TTCTGCTTTG AGTTCCTAGC CTGACTTCTC
  TGAATGATTG ACTATGGCAT CGAAGCACAA GCCAAATCAA ACCTTTCCTC CCCAGGCTGC
  TTTTGGTTAA ACGTTTTATC AAGGGAGTAG AAAATAAACA TAAGACCCAT TGCTTGCTGC
  CTAATTGATG TAGATTGATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss135555703	ENSMUSSNP2087568	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320855299	CHEV_3_102078560	CHEVERUD	SCREENING_POP	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs50551425					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102181953 () rs orientation: forward

Symbol	Name	Function Class
A230001M10Rik	RIKEN cDNA A230001M10 gene	within coordinates
Gm65464	predicted gene, 65464	within coordinates
Rr582219	regulatory region 582219	617 bp proximal
Rr582220	regulatory region 582220	1097 bp proximal
Rr582221	regulatory region 582221	1352 bp proximal