rs50551106 SNP Detail

Summary

• ID
  rs50551106
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37710841 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCATACCC GGGCTTGCTC
  TGCAAGCATG AGGACTGACT GGGTTCAATT TCCGGGATCA CTGTGTACCC TGGTGCCCTT
  CCTTTGTCGT TCCCACGTTG GGGAGGTGGG CAGATTTTTG GGGAACGCTG CCCTGCCAGG
  CTAGTTTACT TGATGAACGC CAGGCCAGTG AGAGAGCTTG TCTCTAAAAA AGGTGGTGGA
  R
  GTGTGGCACC TAAAACAACA GCAGAGGTTG TCCTTAGGAC TGCATTTGCA TGCGTATACA
  GATGCACCTG CACACATAAT TCTTGTTTTT ATACTTGAAT TTTACAAAGG GTTTATTCTT
  AAATTTGAAA GAAAATCTGG GCAGTTTTTA CATCACATTC CACTCTTATG GCTTAGAATT
  CATGTATTAT AGTGCACATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss134810389	ENSMUSSNP3069552	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50551106					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37710841 () rs orientation: forward

Symbol	Name	Function Class
Gm46799	predicted gene, 46799	175 bp upstream
Gm65224	predicted gene, 65224	301 bp upstream
Rr575531	regulatory region 575531	1606 bp distal
Rr575532	regulatory region 575532	within coordinates
Rr575533	regulatory region 575533	288 bp proximal
Tssr28920	transcription start site region 28920	1914 bp downstream
Tssr28921	transcription start site region 28921	665 bp downstream