rs50549088 SNP Detail

Summary

• ID
  rs50549088
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:149840181 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGCTTAGT ATGTGCGGGG
  TGTGTGGCTT CATTGGTAGT GTGTTTGCTT GGTATGCTTG AGTAGCATGC ACAAAGCCCT
  GGGTTGAATT TTCCCAGCAC TGTATAACCC ACACAAACTG GTGCATATCC ATAATTCCAG
  CACTCTGCAG GTAGAGGCAA GAGAATCACT ATGATTCCAA GACGAGAACT ACTCAGTGGG
  Y
  TCCAGGCTAG CCTAGGCTAC AAAGTGCAGC CTTACCAGAA GAACAAGAGG AGGAAGAGGA
  AGAGAAGGCT GCTGCTGCTG AGCCAGGCAT GTACTCTATA TATGAAGACA CAGAGATCAT
  AAGTTCAAGG TCATCCTAGA CTATATAGGG AGTTGAGGTC AGTCTAGGCT AGAGACCCCT
  GTCTTTAAGG GGAAAAAATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss134502961	ENSMUSSNP2661950	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs50549088					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:149840181 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
DXMit153	DNA segment, Chr X, Massachusetts Institute of Technology 153			1184 bp distal
Fgd1	FYVE, RhoGEF and PH domain containing 1			Intron
				Noncoding-Transcript-Variant
Rr694365	regulatory region 694365			1275 bp distal