rs50546546 SNP Detail

Summary

• ID
  rs50546546
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:139300675 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A GGCTTTGTCC TGTGAGACAG GGTACCTGCC TGCAAGCTTA
  CGCACAAGCA GACAAGACGG ACACATAAGC TAGTAACAAG ACAATGGCGG TGAGAGGGGA
  R
  AAAAAGATGT GGCCGGAAGA ATCTAAAACA TACCACATAT CTGGTTAAGA GCTGACGGTG
  TAAGCCACAG GCATTCAAGG TGGGGTCCTT CCCTTAGGAA G                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147674670	ENSMUSSNP3276535	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50546546					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:139300675 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15171	CpG island 15171	322 bp proximal
Iffo2	intermediate filament family orphan 2	Intron
Rr603244	regulatory region 603244	866 bp proximal
Rr603245	regulatory region 603245	1167 bp proximal
Rr603246	regulatory region 603246	1260 bp proximal
Tssr39955	transcription start site region 39955	1280 bp upstream
Tssr39956	transcription start site region 39956	1333 bp upstream