rs50545595 SNP Detail

Summary

• ID
  rs50545595
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100823838 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGTCCACAG TGTGAGACTG
  ACACTTTCTG ACTGCGTCAA CCGGAGTCTA TGTGGGGACC ATGACAGACA CTTGCCAGTC
  AACAGAAGTC AAATCCAAAG GGTGAAACGT CAAAAATAAG ACCATGAAGA CTTTTTCTAC
  AAGAGCAGGT AGGTAAGTTA CAGTGGGGCC GATGCCTTGT GTAGTTTGAG TCCAGCCTTC
  S
  CCTCTATGGA GAGCTTGAAA ACTGACATCA TTCTAACTGT CTAACTGTCA CCTTCTCAAG
  GTTGGAAGCT GCCCATTTAT CACCAAGAGT CAGTATCGGG GAACTATTTA ATGCCTGTTG
  TCTCTCATAA TTACATCACC TCATAATCTA TTCCTGCCTT CGTTGCTTCC CTCTTTCCTT
  CCTTTCTTTA ATGACCTTGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135542905	ENSMUSSNP6901409	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50545595					SNP	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100823838 () rs orientation: forward

Symbol	Name	Function Class
Gm40108	predicted gene, 40108	1302 bp downstream
Rr581925	regulatory region 581925	321 bp proximal
Rr581926	regulatory region 581926	415 bp proximal