rs50544401 SNP Detail

Summary

• ID
  rs50544401
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:121277237 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCACA GGCTGGCTGT TCCCTCTCCT
  Y
  AAGGGTTCTT CTTGCCCCTC CGTGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss147386310	ENSMUSSNP1666570	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320483200	CHEV_2_121272492	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs50544401					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121277237 () rs orientation: forward

Symbol	Name	Function Class
Gm75262	predicted gene, 75262	within coordinates
Rr563824	regulatory region 563824	1517 bp proximal
Rr563825	regulatory region 563825	1620 bp proximal
Rr563826	regulatory region 563826	1949 bp proximal