rs50543318 SNP Detail

Summary

• ID
  rs50543318
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:38843063 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGCTTAAA ATGTACCGTT
  TGGACCAAAG AAGAGGTGCT TTTTCTTCTT TCTTTTTTAA TCATGGGATA AACAACATGA
  GATCTTACTA ATGTCATCCT TTAAATCTCA ACTGTACAAA TGAGTCATGA AAACCTGAGT
  GAAGGACTCA AGCCTGTGCC CCTCGCTTCA TTCACCTGCA GAGTGAATGA TGTCATTAGT
  R
  TCTCCTAGTT ACCAGGAAGT AGCAGTACGT GCAGCATCCA CAGAGGATGC CATAGCAACA
  AGGCTATTAC AAAGGATGCC ACAGAGACTA CTGCAAGGAT TCCACAGAGG CTATGTACAG
  ATTTATTGTT TTCCCTTCCT GCCTGGAGTG TGAATTCTAT GGACCATAAA CAATCAAATA
  TTGCTTGCTT TGAATTAAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss60388735	NES15898910	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	G	G		G	A	G		G
ss320723083	CHEV_3_38687836	CHEVERUD	SCREENING_POP	f	SNP							A				G
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs50543318					SNP	A	G	G	G	G	G	A	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60388735	NES15898910	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38843063 () rs orientation: forward

Symbol	Name	Function Class
Rr575703	regulatory region 575703	within coordinates