rs50543280 SNP Detail

Summary

• ID
  rs50543280
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:102059875 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A TCTCTGTCTA TCCTCCCCTC CAACAGCACA ACCAAAGTAT
  AACTTACACA CGGTGGGGCA GAGGAAAAAC AGGTCTTCTT TTCTTTCCTT TTGACCCTTG
  K
  ATTCTATTTT ATGTGTACTC TGCCTGCAGT CCAAAGGGTA GGTATGGGGA AGGGGAGAGA
  AGCTGAGAAC AGAGTCAAGG AGCCAGACAA AAGGCTCCAG A                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss135554493	ENSMUSSNP2816214	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs50543280					SNP	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102059875 () rs orientation: forward

Symbol	Name	Function Class
Gm65665	predicted gene, 65665	within coordinates
Rr582192	regulatory region 582192	within coordinates
Rr582193	regulatory region 582193	1596 bp proximal
Vangl1	VANGL planar cell polarity 1	1024 bp downstream