rs50540251 SNP Detail

Summary

• ID
  rs50540251
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:32951472 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTGACTGT TTTTGTCTCT
  CACTGCCACA GCTACTTTTT CAGTACCTAA AAGAGCTCCC CGGGCAGCAT AAACTAGGGG
  GTTACACTCC AACAAATGTC TGCAACATCT GGCCTATGTG AGCCTGCCTC AAGAAGAAAA
  GAAAAAGAAC AACTTACTGA GCGATTTAGG AGTGTGGTAA GCCTGGAGCC TAATGTAAAC
  M
  AAAGGTTACT TCAAAGAATG TGTTTATTTC AAATTCATAG CAGTCCCAAT GACCAGGCTC
  AGATAATCAA TGCTATTTCC AGCCTTATAT GAATGCCATT CTACTCAAGA AAAATCTCAT
  GGGGTTGGCT GCTCAGGACT TAGTGGGTAA AGTGCGCTCT GATGAAGCAT GAGAACCCAA
  ATTCAAATCC CTCAGCACCG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146163665	ENSMUSSNP3319656	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	A
ss321072562	CHEV_4_33038447	CHEVERUD	SCREENING_POP	f	SNP				C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50540251					SNP	C	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:32951472 () rs orientation: forward

Symbol	Name	Function Class
Ankrd6	ankyrin repeat domain 6	631 bp upstream
Cpgi14106	CpG island 14106	108 bp distal
Cpgi14107	CpG island 14107	167 bp proximal
Rr590062	regulatory region 590062	657 bp distal
Rr590063	regulatory region 590063	964 bp distal
Rr590064	regulatory region 590064	141 bp distal
Rr590065	regulatory region 590065	521 bp distal
Tssr41164	transcription start site region 41164	606 bp upstream