rs50538579 SNP Detail

Summary

• ID
  rs50538579
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:34687249 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TTTAGAAACG TGGAATTCTG GAATGTGAAA GTGAGCGGGG
  CCTCTGGGAC CCTTTGGGGG TGATGCTGTC TTTCTACAGA CACAGAGCCC AGAGGGATAA
  C
  TAAGCTTACC AAAGCCAGAC AACAGCCCGC AAGGATGGGG CTCCTCTGTT CCCTGAGCAG
  AGGAGGCCTT TTTTCGCAGT AGTGTCTGTG AGGTTTGAAA A                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss133112983	ENSMUSSNP1903898	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs50538579					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:34687249 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cald1	caldesmon 1			Intron
				Noncoding-Transcript-Variant
Gm38787	predicted gene, 38787			1981 bp downstream
Rr628363	regulatory region 628363			670 bp distal
Rr628364	regulatory region 628364			within coordinates
Tssr55522	transcription start site region 55522			868 bp downstream
Tssr55523	transcription start site region 55523			817 bp downstream
Tssr55524	transcription start site region 55524			772 bp downstream
Tssr55525	transcription start site region 55525			728 bp downstream
Tssr55526	transcription start site region 55526			679 bp downstream