rs50537124 SNP Detail

Summary

• ID
  rs50537124
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153349707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCCCAGAG AGTCTTCCGG
  TTCTTTGCAG CTTATCCTCT GTGCAGATAT TTTAATTAAT GTTTAATCTT CCCGTGTTTG
  TGCCTGGAGG CAAAGCCTGT GAGGGGGCAG AGTTCTCAGT CATAGCCTCA GACAAGCTGC
  AAGTTTAACA TTAAACAACC ACAACTCAAA TGACCAGCCA TACCCTCGCC CTCCATCCCT
  M
  CTGCCAGACG CACAGGGCCA CGCAGTGCGC ATGCTCTGCA GTTGCTCCCT CTCATCCTCC
  AACTGTTACA ATGGTGGGTG TCTATTTCTC CCCCACCCCC ACCCCCGTTC CTGGGGAGGG
  GCTGGATTCT GAGAGAAAAT GGCTCTGTCA CTCAAGAGGG ATGAAGCGAG AGGAGAAACG
  CTACGCTAGA AATGATTACC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss136110338	ENSMUSSNP2517265	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs50537124					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153349707 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587714	regulatory region 587714			within coordinates
Rr587715	regulatory region 587715			1744 bp proximal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant