rs50534212 SNP Detail

Summary

• ID
  rs50534212
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:38918944 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAATTGAA TAACAGGTAT
  TGTCAGGGAT TGCTGTGTGC AGGAGCATAT TGTTCAAATG GCTACAGGTT TTAGCTTCCG
  TACAGTCTTC ATGGTGACTT TGCACGTTAA GATTTCTAAA CGCCTGTTCC TATGTATCTC
  TCAGTGTTCA AGAATAAATA TACACAATCA CTCTTTCAAG GCATTCCACT ACATTTAATG
  Y
  CACACTCCTT TTCTACCAGA GGAAATGTGG TGTCTTTAAA CTGAAAGAGT TTAGTAGGAG
  TCACATTTTT TCCAATTATT TGAAGCCCTC AAATATGTCT CTGGTATATG AATAAACCAT
  GTCGGGTGTG GCTGTACATA CCTCTGATCT CAGGACTTGG GAGATAGAGG AAGGTGGATA
  TCTGTGAGTT GAAGATGAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52233747	NES15205659	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50534212					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52233747	NES15205659	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:38918944 () rs orientation: forward

Symbol	Name	Function Class
Lama4	laminin, alpha 4	Intron
Tssr92972	transcription start site region 92972	662 bp upstream