rs50533168 SNP Detail

Summary

• ID
  rs50533168
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:103107721 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGTCAGAG ATTTTAAATT
  TTTTCTTGTG TATAAAATAA TGGGTTTCAT TTTGACATTT TTATATGTGT ATAACATGAA
  TTTTGAACCA TTCTACCATT ACTCTCCATT GCTTTCCCTC TTCCACTTTC ATTGATGCTT
  TCCCTCAACT CTTTAAAAAG TGAAAATTAT AAGACTAAAA ATAAGTAATA CTTAGAATTT
  T
  AAAATATCTC TGGCTGAATT TAAAACAAAG AGATGTAAAA GCAAAAGTTT AGGAATTTAC
  AGATAGAATA CTGAAGTTAT ATATGTATAT ACACACACAT GCACACACAC ACATACATAT
  ACACACATGT ATGTGAATCA GAAATCTGTG GAACAATAAC TATACACATG TCTGAGTAAC
  AGAAGGAAAG GCCAGGGAGA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss147139532	ENSMUSSNP3207736	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss321236297	CHEV_4_102923129	CHEVERUD	SCREENING_POP	f	SNP		T	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs50533168					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:103107721 () rs orientation: forward

Symbol	Name	Function Class
4921539E11Rik	RIKEN cDNA 4921539E11 gene	Intron
Rr376942	regulatory region 376942	576 bp downstream
Rr596380	regulatory region 596380	498 bp distal