rs50532623 SNP Detail

Summary

• ID
  rs50532623
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:38342344 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCTTCCTT ACCCCAAAGA
  CACCTGAAGT CTAGCAGAAG TCCAGACTTT CATCGAGATA TCTGCAGATG CAGAGAGATC
  ACAGGGCAAA AGGAAAACAC AGAGGCTCGC CCTTCTCACT GTTTCTGCTA GAACCAGGAT
  TTTTTTTTAT TCTCGATCTT CCAGGACATT TTCTTTAGAA CACAAAAAGA CAGGTCATAT
  Y
  CTGTTCTCTC TGCTCTCCTA TATGACTTCT TGATCTCAGT AGTCAAAGCT AAGTCCCACA
  ACAATGATGA ACTACATTAA TGCCCCTCAC TGAACCTCCA GTTACAGAAA TGGCATAGCT
  CCGACATTTA TAAACAGTGC ATTTCCTATA TTACTAGAAA TGGTTATTTT TTTTTCTCCC
  AAGAATCATG TCTGATGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	CAST/EiJ	KK/HlJ	NZW/LacJ
ss60391346	NES15888598	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	CAST/EiJ	KK/HlJ	NZW/LacJ
rs50532623					SNP	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60391346	NES15888598	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38342344 () rs orientation: forward

Symbol	Name	Function Class
Rr575656	regulatory region 575656	914 bp proximal