rs50531296 SNP Detail

Summary

• ID
  rs50531296
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135621578 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAAGGAAG GAAGGAAGGA
  AAAGGAGAAA ACACACTTCC TGGGATGGGA TGAGACCAAT CTGCAGAGTT CTTACTCTGC
  AAGCATGGGG CCCTGAGGTC AATCCCCTGG AACCCAGCTT TAAAAGGGAA AGGTGATTCA
  GTGGTTAAGA GCACTGGCTG CTCTTCCACA GGACCCAGGT TCAATTCCCA GCACCCACAT
  R
  GCTGCTTGCA ATTGCCTGAA ACCCCAGACC CAGGAGATCC GAAGCCTCTT CTGATCATTG
  AGGGCACCAG GCACACATGT GGTGTGCATA CACACATGCA GGCAAAACAC TCACTCACAT
  GCCTATATGT ACATGCATGC ACACACATGC ACACTCACAT GCACACGTGC ACACACGAGC
  ATCCACAGGC ACATGCACAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147553102	ENSMUSSNP372824	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50531296					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135621578 () rs orientation: forward

Symbol	Name	Function Class
Cnr2	cannabinoid receptor 2	1127 bp upstream
Rr602181	regulatory region 602181	1118 bp distal
Rr602182	regulatory region 602182	802 bp distal
Rr602183	regulatory region 602183	724 bp proximal
Rr602184	regulatory region 602184	1138 bp proximal
Rr602185	regulatory region 602185	1704 bp proximal
Tssr39650	transcription start site region 39650	913 bp upstream
Tssr39651	transcription start site region 39651	1117 bp upstream
Tssr39652	transcription start site region 39652	1147 bp upstream