rs50523333 SNP Detail

Summary

• ID
  rs50523333
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17463097 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCTGTATA GTGGCTGTGG
  CTTGAATGAC TCTCAAAGTT ACTTCTATAC ATACCTCTAT GTCCATTATC GAATCAGCTC
  TTCTGACAAT TGGAAAGAAC TCCTATTCTA AAAGGCAATG GATTCCTTAG ATCCTTTCAC
  CTTATTGTAT CCTTGTAGGG AAATGCAAAA TTTTAGAAAC GATTCTAATA AACGAATCTT
  Y
  CTAAGTAAAT CCTTTTCAAT TTCTTTTAAT ATTCGAGATT TGAACTTATG TGTTGGATTT
  GTTAGTTGCT ATTTGTCTAT GTAACCGCCT TGTGTCCATT TGTCTATTTA ATTACCCTGT
  GTCCAGCTAT GAGGAAAAAA AAGTGAAAAT TAACCAGAAG CCTCCCCTGG GTTAAACTCC
  TGGGGTTCTT CCAGAAATCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133014987	ENSMUSSNP1032090	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50523333					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17463097 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17176	CpG island 17176	217 bp proximal
Met	met proto-oncogene	702 bp upstream
Rr626799	regulatory region 626799	212 bp proximal
Rr626800	regulatory region 626800	376 bp proximal
Rr626801	regulatory region 626801	419 bp proximal
Rr626802	regulatory region 626802	951 bp proximal
Tssr55050	transcription start site region 55050	334 bp upstream
Tssr55051	transcription start site region 55051	457 bp upstream
Tssr55052	transcription start site region 55052	651 bp upstream
Tssr55053	transcription start site region 55053	728 bp upstream
Tssr55054	transcription start site region 55054	787 bp upstream
Tssr55055	transcription start site region 55055	803 bp upstream
Tssr55056	transcription start site region 55056	829 bp upstream
Tssr55057	transcription start site region 55057	994 bp upstream
Tssr55058	transcription start site region 55058	1034 bp upstream
Tssr55059	transcription start site region 55059	1073 bp upstream