rs50522812 SNP Detail

Summary

• ID
  rs50522812
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:66991360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTGCCTAA TGACTTGTTG
  GAAAGGGCCC TGCCTCGACC AAATTAATCA GAAGCCCTGA GGTTCACTGA GCAGGTAGGG
  GAAGAGGGAG GAGATTCCAG TCCTGCCCAC AGCTGCAGTC TGTAGACCAC CATTGTCCTG
  GACCCCATAC TAGATCTGCA TAAGCTGTGG AGGTGGCTAA TGGTGCCCTT CTCTTACCAA
  Y
  GAGAAGATAA ACAGTCAAAG TGAAACAACC TGCCCACTCT CAACCTCCTG ATTAGTTGCA
  GGGAAGCAGC CAAGCCTGGT ACCTGGAAGC CCGACGCGAC GCCAAGCCAA GGCCTAGTCC
  AAAGTCCTGC ACACCGATCG AAGGGATATC ATTGGCTCTG GTTTTTGAAT GTGTTTTGGT
  TTCATATAAA TGTGTAAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60892247	NES15963972	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50522812					SNP	C	C	C	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60892247	NES15963972	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:66991360 () rs orientation: forward

Symbol	Name	Function Class
Gm15644	predicted gene 15644	1505 bp downstream
Gng12	guanine nucleotide binding protein (G protein), gamma 12	Intron
Rr631574	regulatory region 631574	within coordinates
Rr631575	regulatory region 631575	1928 bp proximal